Note
Go to the end to download the full example code.
Coverage track for a BAM file#
Create a CoverageTrack.

[<Axes: title={'center': 'chr22'}, ylabel='RNA-seq'>]
from pygv.viewer import GenomeViewer
from pygv.tracks.bam_track import CoverageTrack
gv = GenomeViewer()
track = CoverageTrack(
"../examples/data/s03.chr22.bam",
name="RNA-seq", y_label_rotation="vertical", y_label_ha="center")
gv.add_track(track)
gv.plot("chr22", 40345142, 40367239)
Total running time of the script: (0 minutes 0.101 seconds)