Collapsed reads track#

Create a CollapsedReadTrack to show aligned reads in a BAM file.

chr22
[<Axes: title={'center': 'chr22'}, ylabel='RNA-seq'>]

from pygv.viewer import GenomeViewer
from pygv.tracks.bam_track import CollapsedReadTrack
gv = GenomeViewer()
track = CollapsedReadTrack(
    "../examples/data/s03.chr22.bam",
    name="RNA-seq", )
track.sampling_ratio = 0.3
gv.add_track(track)
gv.plot("chr22", 40345142, 40367239)

Total running time of the script: (0 minutes 1.131 seconds)

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