Index A | B | C | D | E | F | G | H | I | L | M | N | O | P | R | S | T | U | V | Y A add_group_autoscale() (pygv.viewer.GenomeViewer method) add_group_autoscale_by_name() (pygv.viewer.GenomeViewer method) add_group_label() (pygv.viewer.GenomeViewer method) add_group_label_by_name() (pygv.viewer.GenomeViewer method) add_highlight_link() (pygv.tracks.bed_track.BedPETrack method) add_highlight_region() (pygv.tracks.track.Track method) add_track() (pygv.viewer.GenomeViewer method) add_tracks() (pygv.viewer.GenomeViewer method) allowed_feature_lanes (pygv.tracks.track.AnnotationTrack property) alpha (pygv.tracks.track.Track property) AnnotationTrack (class in pygv.tracks.track) apply_color_gradient (pygv.tracks.bigbed_track.UCSCMutationTrack property) arrow_interval (pygv.tracks.track.AnnotationTrack property) B BedPETrack (class in pygv.tracks.bed_track) BedTrack (class in pygv.tracks.bed_track) BigBed6Track (class in pygv.tracks.bigbed_track) BigWigTrack (class in pygv.tracks.bigwig_track) block_line_width (pygv.tracks.bed_track.BedTrack property) C clear_highlight_links() (pygv.tracks.bed_track.BedPETrack method) CollapsedReadTrack (class in pygv.tracks.bam_track) color (pygv.tracks.track.Track property) color_map (pygv.tracks.bigbed_track.UCSCMutationTrack property) colors (pygv.tracks.bigwig_track.OverlayingTrack property) ConnectionArcTrack (class in pygv.tracks.bed_track) convert_nan_to_num (pygv.tracks.track.NumericalTrack property) CoverageTrack (class in pygv.tracks.bam_track) D data_transform (pygv.tracks.track.NumericalTrack property) DynamicValueTrack (class in pygv.tracks.track) DynseqTrack (class in pygv.tracks.logo_track) E edge_color (pygv.tracks.track.Track property) equal_space_for_pos_neg_ranges (pygv.tracks.track.NumericalTrack property) F features_per_lane (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.track.AnnotationTrack property) filters (pygv.tracks.gtf_track.GtfTrack property) font_box_alpha (pygv.tracks.track.AnnotationTrack property) font_color (pygv.tracks.track.Track property) font_size (pygv.tracks.track.Track property) G GenomeViewer (class in pygv.viewer) get_filters() (pygv.tracks.bigbed_track.BigBed6Track method) (pygv.tracks.bigbed_track.UCSCMutationTrack method) GtfTrack (class in pygv.tracks.gtf_track) H height (pygv.tracks.track.AnnotationTrack property) (pygv.tracks.track.Track property) hide_visual_dup (pygv.tracks.track.AnnotationTrack property) I inward_yticks (pygv.tracks.track.Track property) L label_masked_peak (pygv.tracks.track.NumericalTrack property) labels (pygv.tracks.bigwig_track.OverlayingTrack property) lane_space (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.track.AnnotationTrack property) line_color (pygv.tracks.bam_track.CollapsedReadTrack property) (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.bigbed_track.UCSCMutationTrack property) (pygv.tracks.track.AnnotationTrack property) line_width (pygv.tracks.track.Track property) LogoTrack (class in pygv.tracks.logo_track) M max_num_read (pygv.tracks.bam_track.CollapsedReadTrack property) max_val (pygv.tracks.track.NumericalTrack property) min_val (pygv.tracks.track.NumericalTrack property) module pygv.tracks.bam_track pygv.tracks.bed_track pygv.tracks.bigbed_track pygv.tracks.bigwig_track pygv.tracks.gtf_track pygv.tracks.logo_track N n_bins (pygv.tracks.track.NumericalTrack property) name (pygv.tracks.track.Track property) neg_color (pygv.tracks.bigwig_track.PairedStrandSpecificTrack property) NumericalTrack (class in pygv.tracks.track) O overflow_label_auto_adjust (pygv.tracks.track.NumericalTrack property) overflow_label_format (pygv.tracks.track.NumericalTrack property) OverlayingTrack (class in pygv.tracks.bigwig_track) P padding_left (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.track.AnnotationTrack property) padding_right (pygv.tracks.bam_track.SplicedReadTrack property) PairedStrandlessTrack (class in pygv.tracks.bigwig_track) PairedStrandSpecificTrack (class in pygv.tracks.bigwig_track) PairedStrandSpecificTracks (class in pygv.tracks.bigwig_track) patch_height (pygv.tracks.bam_track.CollapsedReadTrack property) (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.track.AnnotationTrack property) pileup_offset (pygv.tracks.bam_track.CollapsedReadTrack property) plot() (pygv.viewer.GenomeViewer method) plot_thickness (pygv.tracks.bed_track.BedTrack property) pos_color (pygv.tracks.bigwig_track.PairedStrandSpecificTrack property) pygv.tracks.bam_track module pygv.tracks.bed_track module pygv.tracks.bigbed_track module pygv.tracks.bigwig_track module pygv.tracks.gtf_track module pygv.tracks.logo_track module R ReadArcTrack (class in pygv.tracks.bam_track) remove_highlight() (pygv.tracks.track.Track method) remove_track() (pygv.viewer.GenomeViewer method) reset_group_autoscale() (pygv.viewer.GenomeViewer method) reset_max_val() (pygv.tracks.track.NumericalTrack method) reset_min_val() (pygv.tracks.track.NumericalTrack method) S save() (pygv.viewer.GenomeViewer method) scale (pygv.tracks.track.NumericalTrack property) set_filters() (pygv.tracks.bigbed_track.BigBed6Track method) (pygv.tracks.bigbed_track.UCSCMutationTrack method) set_global_highlight_region() (pygv.viewer.GenomeViewer method) set_highlight_links() (pygv.tracks.bed_track.BedPETrack method) set_highlight_regions() (pygv.tracks.track.Track method) (pygv.viewer.GenomeViewer method) show_mode (pygv.tracks.bed_track.BedTrack property) show_name (pygv.tracks.bam_track.SplicedReadTrack property) (pygv.tracks.track.AnnotationTrack property) show_range (pygv.tracks.track.NumericalTrack property) show_tracks() (pygv.viewer.GenomeViewer method) show_transcript_id (pygv.tracks.gtf_track.GtfTrack property) SplicedReadTrack (class in pygv.tracks.bam_track) stat_method (pygv.tracks.track.NumericalTrack property) StrandSpecificCoverageTrack (class in pygv.tracks.bam_track) T Track (class in pygv.tracks.track) U UCSCMutationTrack (class in pygv.tracks.bigbed_track) V values (pygv.tracks.logo_track.LogoTrack property) Y y_label_ha (pygv.tracks.track.Track property) y_label_rotation (pygv.tracks.track.Track property) y_label_va (pygv.tracks.track.Track property) y_tick_format (pygv.tracks.track.Track property)