.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/plot_bigbed.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_plot_bigbed.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_plot_bigbed.py:


============
BigBed Track
============

Create a :class:`~pygv.tracks.bigbed_track.BigBed6Track`.

.. GENERATED FROM PYTHON SOURCE LINES 8-23



.. image-sg:: /auto_examples/images/sphx_glr_plot_bigbed_001.png
   :alt: chr14
   :srcset: /auto_examples/images/sphx_glr_plot_bigbed_001.png, /auto_examples/images/sphx_glr_plot_bigbed_001_2_00x.png 2.00x
   :class: sphx-glr-single-img


.. rst-class:: sphx-glr-script-out

 .. code-block:: none

    /home/docs/checkouts/readthedocs.org/user_builds/pygv/checkouts/latest/pygv/tracks/bigbed_track.py:259: RuntimeWarning: Input bigBed should only have 6 fields while 10 fields are observed. Only the first 6 are used.
      warnings.warn(






|

.. code-block:: Python

    import matplotlib.pyplot as plt
    from pygv.viewer import GenomeViewer
    from pygv.tracks.bigbed_track import BigBed6Track
    gv = GenomeViewer()
    track = BigBed6Track(
        "../examples/data/test.bigBed",
        name="With names", )
    gv.add_track(track)
    no_name_track = BigBed6Track(
        "../examples/data/test.bigBed",
        name="No names", )
    no_name_track.show_name = False
    gv.add_track(no_name_track)
    gv.plot("chr14", 100235930, 100242295)
    plt.tight_layout()


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.131 seconds)


.. _sphx_glr_download_auto_examples_plot_bigbed.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_bigbed.ipynb <plot_bigbed.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_bigbed.py <plot_bigbed.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_bigbed.zip <plot_bigbed.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_