.. DO NOT EDIT.
.. THIS FILE WAS AUTOMATICALLY GENERATED BY SPHINX-GALLERY.
.. TO MAKE CHANGES, EDIT THE SOURCE PYTHON FILE:
.. "auto_examples/plot_bedpe_direction.py"
.. LINE NUMBERS ARE GIVEN BELOW.

.. only:: html

    .. note::
        :class: sphx-glr-download-link-note

        :ref:`Go to the end <sphx_glr_download_auto_examples_plot_bedpe_direction.py>`
        to download the full example code.

.. rst-class:: sphx-glr-example-title

.. _sphx_glr_auto_examples_plot_bedpe_direction.py:


====================
Directed BEDPE Track
====================

.. GENERATED FROM PYTHON SOURCE LINES 7-22



.. image-sg:: /auto_examples/images/sphx_glr_plot_bedpe_direction_001.png
   :alt: chr1
   :srcset: /auto_examples/images/sphx_glr_plot_bedpe_direction_001.png, /auto_examples/images/sphx_glr_plot_bedpe_direction_001_2_00x.png 2.00x
   :class: sphx-glr-single-img





.. code-block:: Python

    import matplotlib.pyplot as plt
    from pygv.viewer import GenomeViewer
    from pygv.tracks.bed_track import ConnectionArcTrack
    from pygv.tracks.bigwig_track import BigWigTrack
    gv = GenomeViewer()
    interaction_track = ConnectionArcTrack(
        "../examples/data/demo.bedpe.gz",
        name="Interaction", y_label_rotation="horizontal", y_label_ha="right", height=1)
    gv.add_track(interaction_track)
    dnase_track = BigWigTrack(
        "../examples/data/K562_DNase_ENCFF530BKH.chr1.bw",
        name="DNase", )
    gv.add_track(dnase_track)
    gv.plot("chr1", 155117019, 155130103)
    plt.tight_layout()


.. rst-class:: sphx-glr-timing

   **Total running time of the script:** (0 minutes 0.144 seconds)


.. _sphx_glr_download_auto_examples_plot_bedpe_direction.py:

.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-example

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download Jupyter notebook: plot_bedpe_direction.ipynb <plot_bedpe_direction.ipynb>`

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download Python source code: plot_bedpe_direction.py <plot_bedpe_direction.py>`

    .. container:: sphx-glr-download sphx-glr-download-zip

      :download:`Download zipped: plot_bedpe_direction.zip <plot_bedpe_direction.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_